List of Publications (2022 - 2017)

2022   -   2021   -   2020   -   2019   -   2018   -   2017 )


Baur ST, Markussen S, Di Bartolomeo F, Poehlein A, Baker A, Jenkinson ER, Daniel R, Wentzel A, Dürre P (2022) Increased butyrate production in Clostridium saccharoperbutylacetonicum from lignocellulose-derived sugars. Appl Environ Microbiol 21:e0241921 (DOI:10.1128/aem.02419-21).

Baur ST, Poehlein A, Renz NJ, Hollitzer SK, Montoya Solano JD, Schiel-Bengelsdorf B, Daniel R, Dürre P (2022) Solvent formation and sol mRNA expression in Clostridium saccharoperbutylacetonicum affected by the long non-coding RNA Assolrna. Front Genet (DOI:10.3389/fgene.2022.966643).

Breidenbach A, Schleuss P-M, Liu S, Schneider D, Dippold MA, de la Haye T, Miehe G, Heitkamp F, Seeber E, Mason-Jones K, Xu X, Huanming Y, Xu J, Dorji T, Gube M, Norf H, Meier J, Guggenberger G, Kuzyakov Y, Spielvogel S (2022) Microbial functional changes mark irreversible course of Tibetan grassland degradation. Nat Commun 13:2681 (DOI:10.1038/s41467-022-30047-7).

Breisch J, Schumm C, Poehlein A, Daniel R, Averhoff B (2022) The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence. Environ Microbiol 24(9):4437-4448 (DOI:10.1111/1462-2920.16075).

Chacón FI, Sineli PE, Mansilla FI, Pereyra MM, Diaz MA, Volentini SI, Poehlein A, Meinhardt F, Daniel R, Dib JR (2022) Native cultivable bacteria from the blueberry microbiome as novel potential biocontrol agents. Microorganisms 10(5):969 (DOI:10.3390/microorganisms10050969).

Dlugosch L, Poehlein A, Wemheuer B, Pfeiffer B, Badewien TH, Daniel R, Simon M (2022) Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome. Nat Commun 11:1186 (DOI:10.1038/s41467-022-28128-8).

Eze MO, Thiel V, Hose GC, George SC, Daniel R (2022) Enhancing rhizoremediation of petroleum hydrocarbons through bioaugmentation with a plant growth-promoting bacterial consortium. Chemosphere 289:133143 (DOI:10.1016/j.chemosphere.2021.133143).

Eze MO, Thiel V, Hose GC, George SC, Daniel R (2022) Bacteria-plant interactions synergistically enhance biodegradation of diesel fuel hydrocarbons. Commun Earth Environ 3:192 (DOI:10.1038/s43247-022-00526-2).

Fussmann D, von Hoyningen-Huene AJE, Reimer A, Schneider D, Karius V, Riechelmann S, Pederson CH, Swart PK, Daniel R, Arp G (2022) Decoupling of pore water chemistry, bacterial community profiles, and carbonate mud diagenesis in a land-locked pool on Aldabra (Seychelles, Indian Ocean). Geomicrobiol J 1-19 (DOI:10.1080/01490451.2022.2070689).

Gudzuhn M, Alio I, Moll R, de Vries J, Boehlich J, Assmann M, Janneschütz J, Schützenmeister N, Himmelbach A, Poehlein A, Daniel R, Streit WR (2022) Molecular insight into gene response of diorcinol- and rubrolide-treated biofilms of the emerging pathogen Stenotrophomonas maltophilia. Microbiol Spectr 26:e0258221 (DOI:10.1128/spectrum.02582-21).

Guzman J, Ortúzar M, Poehlein A, Daniel R, Trujillo ME, Vilcinskas A (2022) Agromyces archimandritae sp. nov., isolated from the cockroach Archimandrita tessellata. Int J Syst Evol Microbiol 72(3):005283 (DOI:10.1099/ijsem.0.005283).

Hertel R, Schöne K, Mittelstädt C, Meißner J, Zschoche N, Collignon M, Kohler C, Friedrich I, Schneider D, Hoppert M, Kuhn R, Schwedt I, Scholz P, Poehlein A, Martienssen M, Ischebeck T, Daniel R, Commichau FM (2022) Characterization of glyphosate-resistant Burkholderia anthina and Burkholderia cenocepacia isolates from a commercial Roundup® solution. Environ Microbiol Rep 14(1):70-84 (DOI:10.1111/1758-2229.13022).

Hosang L, Canals RC, van der Flier FJ, Hollensteiner J, Daniel R, Flügel A, Odoardi F (2022) The lung microbiome regulates brain autoimmunity. Nature (DOI:10.1038/s41586-022-04427-4).

Kaupper T, Mendes LW, Poehlein A, Frohloff D, Rohrbach S, Horn MA, Ho A (2022) The methane-driven interaction network in terrestrial methane hotspots. Environ Microbiome 17:15 (DOI:10.1186/s40793-022-00409-1).

Kohm K, Floccari VA, Lutz VT, Nordmann B, Mittelstädt C, Poehlein A, Dragoš A, Commichau FM, Hertel R (2022) The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species, prophage integration loci, conserved proteins and lysogeny management components. Environ Microbiol 24(4):2098-2118 (DOI:10.1111/1462-2920.15964).

Leinberger J, Milke F, Christodoulou M, Poehlein A, Caraveo‐Patiño J, Teske A, Brinkhoff T (2022) Microbial epibiotic community of the deep‐sea galatheid squat lobster Munidopsis alvisca. Sci Rep 12:2675 (DOI:10.1038/s41598-022-06666-x).

Lu M, Schneider D, Daniel R (2022) Metagenomic screening for lipolytic genes reveals an ecology-clustered distribution pattern. Front Microbiol 851969 (DOI:10.3389/fmicb.2022.851969).

Murillo T, Schneider D, Fichtel C, Daniel R (2022) Dietary shifts and social interactions drive temporal fluctuations of the gut microbiome from wild redfronted lemurs. ISME COMMUN 2:3 (DOI:10.1038/s43705-021-00086-0).

Pérez CAR, Janz D, Schneider D, Daniel R, Polle A (2022) Transcriptional landscape of ectomycorrhizal fungi and their host provides insight into N uptake from forest soil. mSystems 7(1):e00957-21 (DOI:10.1128/mSystems.00957-21).

Rao S, Esvaran M, Chen L, Keil AD, Gollow I, Simmer K, Wemheuer B, Conway P, Patole S (2022) Probiotic supplementation in neonates with congenital gastrointestinal surgical conditions: a pilot randomised controlled trial. Pediatr Res 1-10 (DOI:10.1038/s41390-021-01884-x).

Rao S, Esvaran M, Chen L, Kok C, Keil AD, Gollow I, Simmer K, Wemheuer B, Conway P, Patole S (2022) Probiotic supplementation in neonates with congenital gastrointestinal surgical conditions: guidelines for future research. Pediatr Res 1-10 (DOI:10.1038/s41390-022-02087-8).

Rosenbaum FP, Poehlein A, Daniel R, Müller V (2022) Energy-conserving dimethyl sulfoxide reduction in the acetogenic bacterium Moorella thermoacetica. Environ Microbiol (DOI:10.1111/1462-2920.15971).

Rudolph K, Schneider D, Fichtel C, Daniel R, Heistermann M, Kappeler PM (2022) Drivers of gut microbiome variation within and between groups of a wild Malagasy primate. Microbiome 10:28 (DOI:10.1186/s40168-021-01223-6).

Ryadin AR, Janz D, Schneider D, Tjoa A, Irawan B, Daniel R, Polle A (2022) Early effects of fertilizer and herbicide reduction on root-associated biota in oil palm plantations. Agronomy 12(1):199 (DOI:10.3390/agronomy12010199).

Sadoughi B, Schneider D, Daniel R, Schülke O, Ostner J (2022) Aging gut microbiota of wild macaques are equally diverse, less stable, but progressively personalized. Microbiome 10:95 (DOI:10.1186/s40168-022-01283-2).

Schöne C, Poehlein A, Jehmlich N, Adlung N, Daniel R, von Bergen M, Scheller S, Rother M (2022) Deconstructing Methanosarcina acetivorans into an acetogenic archaeon. PNAS 119(2):e2113853119 (DOI:10.1073/pnas.2113853119).

Shin JH, Bömeke M, Poehlein A, Hollensteiner J (2022) Complete genome sequence of Bacillus frigoritolerans JHS1. Microbiol Resour Announc e0018422 (DOI:10.1128/mra.00184-22).

Tebbe DA, Geihser S, Wemheuer B, Daniel R, Schäfer H, Engelen B (2022) Seasonal and zonal succession of bacterial communities in North Sea salt marsh sediments. Microorganisms 10:859 (DOI:10.3390/ microorganisms10050859).

Varaljay VA, Charles TC, Daniel R (2022) Editorial: Functional Metagenomics for Enzyme Discovery. Front Microbiol 13:956106 (DOI:10.3389/fmicb.2022.956106).

von Hoyningen‑Huene AJE, Schneider D, Fussmann D, Reimer A, Arp G, Daniel R (2022) DNA‑ and RNA‑based bacterial communities and geochemical zonation under changing sediment porewater dynamics on the Aldabra Atoll. Sci Rep 12:4257 (DOI:10.1038/s41598-022-07980-0).

Wang S, Schneider D, Hartke TR, Ballauff J, de Melo Moura CC, Schulz G, Li Z, Polle A, Daniel R, Gailing O, Irawan B, Scheu S, Krashevska V (2022) Optimising High-throughput sequencing data analysis, from gene database selection to the analysis of compositional data: A case study on tropical soil nematodes. SSRN preprint (DOI:10.2139/ssrn.4078698).

Werner KA, Poehlein A, Schneider D, El-Said K, Wöhrmann M, Linkert I, Hübner T, Brüggemann N, Prost K, Daniel R, Grohmann E (2022) Thermophilic composting of human feces: development of bacterial community composition and antimicrobial resistance gene pool. Front Microbiol 13:824834 (DOI:10.3389/fmicb.2022.824834).

Werner KA, Schneider D, Poehlein A, Diederich N, Feyen L, Axtmann K, Hübner T, Brüggemann N, Prost K, Daniel R, Grohmann E (2022) Metagenomic insights into the changes of antibiotic resistance and pathogenicity factor pools upon thermophilic composting of human excreta. Front Microbiol 13:826071 (DOI:10.3389/fmicb.2022.826071).

Ponraj DS, Lange J, Falstie-Jensen T, Jørgensen P, Ravn C, Poehlein A, Brüggemann H (2022) Amplicon-based next-generation sequencing as a diagnostic tool for the detection of phylotypes of Cutibacterium acnes in orthopedic implant-associated infections. Front Microbiol 13:866893 (DOI:10.3389/fmicb.2022.866893).


Afshar M, Poehlein A, Söderquist B, Brüggemann H (2021) Complete genome sequences of two Staphylococcus saccharolyticus strains isolated from prosthetic joint infections. Microbiol Resour Announc 10(10):e00157-21 (DOI:10.1128/MRA.00157-21).

Ahle CM, Stødkilde-Jørgensen K, Poehlein A, Streit WR, Hüpeden J, Brüggemann H (2021) Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin. BMC Microbiol 21(1):221 (DOI:10.1186/s12866-021-02284-1).

Alio I, Gudzuhn M, Pérez García P, Danso D, Schoelmerich M, Mamat U, Schaible UE, Steinmann J, Yero D, Gibert I, Kohl TA, Niemann S, Gröschel MI, Haerdter J, Hackl T, Vollstedt CH, Bömeke M, Egelkamp R, Daniel R, Poehlein A, Streit WR (2021) Erratum for "Phenotypic and transcriptomic analysis of seven clinical Stenotrophomonas maltophilia isolates identify a small set of shared and commonly regulated genes involved in biofilm lifestyle". Appl Environ Microbiol 87(18):e0130421 (DOI:10.1128/AEM.01304-21).

Aloo BN, Mbega ER, Makumba BA, HertelR, Daniel R (2021) Molecular identification and in vitro plant growth-promoting activities of culturable potato (Solanum tuberosum L.) rhizobacteria in Tanzania. Potato Res 64:67–95 (DOI:10.1007/s11540-020-09465-x).

Arif S, Nacke H, Hoppert M (2021) Metagenome-assembled genome sequences of a biofilm derived from Marsberg copper mine. Microbiol Resour Announc 10(2):e01253-20 (DOI:10.1128/MRA.01253-20).

Arif S, Willenberg C, Dreyer A, Nacke H, Hoppert M (2021) Sasso Pisano geothermal field environment harbours diverse Ktedonobacteria representatives and illustrates habitat-specific adaptations. Microorganisms 9(7):1402 (DOI:10.3390/microorganisms9071402).

Ballauff J, Schneider D, Edy N, Irawan B, Daniel R, Polle A (2021) Shifts in root and soil chemistry drive the assembly of belowground fungal communities in tropical land-use systems. Soil Biol Biochem 154:108140 (DOI:10.1016/j.soilbio.2021.108140).

Benda M, Woelfel S, Faßhauer P, Gunka K, Klumpp S, Poehlein A, Kálalová D, Šanderová H, Daniel R, Krásný L, Stülke J (2021) Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis. Nucleic Acids Res 49(12):7088-7102 (DOI:10.1093/nar/gkab528).

Borges LMS, Pfeiffer B, Pandur S, Toubarro D, Tanase A-M, Chiciudean I, Menzel MN, Hoppert M, Daniel R, Simões N, Altermark B (2021) A picture is worth a thousand words: novel photographic evidence on the anatomy of the digestive system of three shipworm species (Bivalvia, Teredinidae). Zoomorphol 140:469-485 (DOI:10.1007/s00435-021-00540-6).

Chea L, Pfeiffer B, Schneider D, Daniel R, Pawelzik E, Naumann M (2021) Morphological and metabolite responses of potatoes under various phosphorus levels and their amelioration by plant growth-promoting rhizobacteria. Int J Mol Sci 22:5162 (DOI:10.3390/ijms22105162).

Clausing S, Likulunga LE, Janz D, Feng HY, Schneider D, Daniel R, Krüger J, Lang F, Polle A (2021) Impact of nitrogen and phosphorus addition on resident soil and root mycobiomes in beech forests. Biol Fertil Soils 57:1031–1052 (DOI:10.1007/s00374-021-01593-x).

Diaz-Valerio S, Lev Hacohen A, Schöppe R, Liesegang H (2021) IDOPS, a profile HMM-based tool to detect pesticidal sequences and compare their genetic context. Front Microbiol 12:664476 (DOI:10.3389/fmicb.2021.664476).

Eze MO, Hose GC, George SC, Daniel R (2021) Diversity and metagenome analysis of a hydrocarbon‑degrading bacterial consortium from asphalt lakes located in Wietze, Germany. AMB Express 11:89 (DOI:10.1186/s13568-021-01250-4).

Faßhauer P, Busche T, Kalinowski J, Mäder U, Poehlein A, Daniel R, Stülke J (2021) Functional redundancy and specialization of the conserved cold shock proteins in Bacillus subtilis. Microorganisms 9(7):1434 (DOI:10.3390/microorganisms9071434).

Friedrich I, Hollensteiner J, Scherf J, Weyergraf J, Klassen A, Poehlein A, Hertel R, Daniel R (2021) Complete genome sequence of Stenotrophomonas indicatrix DAIF1. Microbiol Resour Announc 10(6):e01484-20 (DOI:10.1128/MRA.01484-20).

Friedrich I, Klassen A, Neubauer H, Schneider D, Hertel R, Daniel R (2021) Living in a puddle of mud: isolation and characterization of two novel Caulobacteraceae strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.. Appl Microbiol 1:38-59 (DOI:10.3390/applmicrobiol1010005).

Friedrich I, Bodenberger B, Neubauer H, Hertel R, Daniel R (2021) Down in the pond: Isolation and characterization of a new Serratia marcescens strain (LVF3) from the surface water near frog’s lettuce (Groenlandia densa). PLoS One 16(11):e0259673 (DOI:10.1371/journal.pone.0259673).

Gerke J, Schneider D, Poehlein A, Cornish VW, Braus GH (2021) Draft genome sequence of Saccharomyces cerevisiae LW2591Y, a laboratory strain for in vivo multigene assemblies. Microbiol Resour Announc 10(9):e01418-20 (DOI:10.1128/MRA.01418-20).

Göbbels L, Poehlein A, Dumnitch A, Egelkamp R, Kröger C, Haerdter J, Hackl T, Feld A, Weller H, Daniel R, Streit WR, Schoelmerich MC (2021) Cysteine: an overlooked energy and carbon source. Sci Rep 11:2139 (DOI:10.1038/s41598-021-81103-z).

Guzman J, Sombolestani AS, Poehlein A, Daniel R, Cleenwerck I, Vandamme P, Vilcinskas A (2021) Entomobacter blattae gen. nov., sp. nov., a new member of the Acetobacteraceae isolated from the gut of the cockroach Gromphadorhina portentosa. Int J Syst Evol Microbiol 71(3): (DOI:10.1099/ijsem.0.004666).

Harting R, Starke J, Kusch H, Pöggeler S, Maurus I, Schlüter R, Landesfeind M, Bulla I, Nowrousian M, de Jonge R, Stahlhut G, Hoff KJ, Aßhauer KP, Thürmer A, Stanke M, Daniel R, Morgenstern B, Thomma BPHJ, Kronstad JW, Braus-Stromeyer SA, Braus GH (2021) A 20-kb lineage-specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum. Mol Plant Pathol 00:1–15 (DOI:10.1111/mpp.13071).

Hollensteiner J, Friedrich I, Hollstein L, Lamping J-P,Wolf K, Liesegang H, Poehlein A, Hertel R, Daniel R (2021) Complete genome sequence of Kinneretia sp. strain DAIF2, isolated from a freshwater pond. Microbiol Resour Announc 10(8):e00003-21 (DOI:10.1128/MRA.00003-21).

Khokon AM, Schneider D, Daniel R, Polle A (2021) Soil layers matter: Vertical stratification of root-associated fungal assemblages in temperate forests reveals differences in habitat colonization. Microorganisms 9(10):2131 (DOI:10.3390/microorganisms9102131).

Krüger L, Herzberg Ch, Rath H, Pedreira T, Ischebeck T, Poehlein A, Gundlach J, Daniel R, Völker U, Mäder U, Stülke J (2021) Essentiality of c-di-AMP in Bacillus subtilis: Bypassing mutations converge in potassium and glutamate homeostasis. PLoS Genetics 17:e1009092 (DOI:10.1371/journal.pgen.1009092).

Lu M, Daniel R (2021) A novel carboxylesterase derived from a compost metagenome exhibiting high stability and activity towards high salinity. Genes 12:122 (DOI:10.3390/ genes12010122).

Michalik S, Reder A, Richts B, Faßhauer P, Mäder U, Pedreira T, Poehlein A, van Heel AJ, van Tilburg AY, Altenbuchner J, Klewing A, Reuß DR, Daniel R, Commichau FM, Kuipers OP, Hamoen LW, Völker U, Stülke J (2021) The Bacillus subtilis minimal genome compendium. ACS Synth Biol (DOI:10.1021/acssynbio.1c00339).

Migliorini LB, de Sales RO, Koga PCM, Doi AM, Poehlein A, Toniolo AR, Menezes FG, Martino MDV, Gales AC, Brüggemann H, Severino P (2021) Prevalence of blaKPC-2, blaKPC-3 and blaKPC-30—carrying plasmids in Klebsiella pneumoniae isolated in a Brazilian hospital. Pathogens 10(3):332 (DOI:10.3390/pathogens10030332).

Moon J, Dönig J, Kramer S, Poehlein A, Daniel R, Müller V (2021) Formate metabolism in the acetogenic bacterium Acetobacterium woodii. Environ Microbiol (DOI:10.1111/1462-2920.15598).

Nguyen M, Wemheuer B, Laffy PW, Webster NS, Thomas T (2021) Taxonomic, functional and expression analysis of viral communities associated with marine sponges. Peer J 9:e10715 (DOI:10.7717/peerj.10715).

Obermeier MM, Wicaksono WA, Taffner J, Bergna A, Poehlein A, Cernava T, Lindstaedt S, Lovric M, Müller Bogotá CA, Berg G (2021) Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance. ISME J 15:921–937 (DOI:10.1038/s41396-020-00822-9).

Pereyra MM, Díaz MA, Soliz-Santander FF, Poehlein A, Meinhardt F, Daniel R, Dib JR (2021) Screening methods for isolation of biocontrol epiphytic yeasts against Penicillium digitatum in lemons. J Fungi 7(3):166 (DOI:10.3390/jof7030166).

Perez MF, Saona LA, Farías ME, Poehlein A, Meinhardt F, Daniel R, Dib JR (2021) Assessment of the plasmidome of an extremophilic microbial community from the Diamante Lake, Argentina. Sci Rep 11:21459 (DOI:10.1038/s41598-021-00753-1).

Petruschke H, Schori C, Canzler S, Riesbeck S, Poehlein A, Daniel R, Frei D, Segessemann T, Zimmerman J, Marinos G, Kaleta C, Jehmlich N, Ahrens CH, von Bergen M (2021) Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome. Microbiome 9:55 (DOI:10.1186/s40168-020-00981-z).

Richts B, Lentes S, Poehlein A, Daniel R, Commichau FM (2021) A Bacillus subtilis ΔpdxT mutant suppresses vitamin B6 limitation by acquiring mutations enhancing pdxS gene dosage and ammonium assimilation. Environ Microbiol Rep (DOI:10.1111/1758-2229.12936).

Rosenbaum FP, Poehlein A, Egelkamp R, Daniel R, Harder S, Schlüter H, Schoelmerich MC (2021) Lactate metabolism in strictly anaerobic microorganisms with a soluble NAD+-dependent l-lactate dehydrogenase. Environ Microbiol 23(8):4661-4672 (DOI:10.1111/1462-2920.15657).

Sagerfors S, Poehlein A, Afshar M, Lindblad BE, Brüggemann H, Söderquist B (2021) Clinical and genomic features of Corynebacterium macginleyi-associated infectious keratitis. Sci Rep 11:6015 (DOI:10.1038/s41598-021-85336-w).

Sagerfors S, Poehlein A, Söderquist B, Brüggemann H (2021) Complete genome sequences of two Corynebacterium macginleyi strains isolated from infectious keratitis. Microbiol Resour Announc 10(17):e00207-21 (DOI:10.1128/MRA.00207-21).

Salar-Vidal L, Achermann I, Aguilera-Correa J-J, Poehlein A, Esteban J, Brüggemann H (2021) Genomic analysis of Cutibacterium acnes strains isolated from prosthetic joint infections. Microorganisms 9(7):1500 (DOI:10.3390/microorganisms9071500).

Schneider D, Zühlke D, Poehlein A, Riedel K, Daniel R (2021) Metagenome-assembled genome sequences from different wastewater treatment stages in Germany. Microbiol Resour Announc 10(27):e00504-21 (DOI:10.1128/MRA.00504-21).

Söderquist B, Afshar M, Poehlein A, Brüggemann H (2021) Staphylococcus saccharolyticus associated with prosthetic joint infections: clinical features and genomic characteristics. Pathogens 10(4):397 (DOI:10.3390/pathogens10040397).

Song W, Wemheuer B, Steinberg PD, Marzinelli EM, Thomas T (2021) Contribution of horizontal gene transfer to the functionality of microbial biofilm on a macroalgae. ISME J 15:807–817 (DOI:10.1038/s41396-020-00815-8).

Taylor JA, Palladino G, Wemheuer B, Steinert G, Sipkema D, Williams TJ, Thomas T (2021) Phylogeny resolved, metabolism revealed: functional radiation within a widespread and divergent clade of sponge symbionts. ISME J 15:503–519 (DOI:10.1038/s41396-020-00791-z).

TrifunoviĆ D, Moon J, Poehlein A, Daniel R, Müller V (2021) Growth of the acetogenic bacterium Acetobacterium woodii on glycerol and dihydroxyacetone. Environ Microbiol (DOI:10.1111/1462-2920.15503).

von Hoyningen-Huene AJE, Schlotthauer TJ, Schneider D, Poehlein A, Daniel R (2021) Pontibacillus sp. ALD_SL1 and Psychroflexus sp. ALD_RP9, two novel moderately halophilic bacteria isolated from sediment and water from the Aldabra Atoll, Seychelles. PLoS One 16(8):e0256639 (DOI:10.1371/journal.pone.0256639).

Wang H, Beule L, Zang H, Pfeiffer B, Ma S, Karlovsky P, Dittert K (2021) The potential of ryegrass as cover crop to reduce soil N2O emissions and increase the population size of denitrifying bacteria. Soil Sci 72(3):1447-1461 (DOI:10.1111/ejss.13047).

Willms IM, Grote M, Kocatürk M, Singhoff L, Kraft AA, Bolz SH, Nacke H (2021) Novel soil-derived beta-lactam, chloramphenicol, fosfomycin and trimethoprim resistance genes revealed by functional metagenomics. Antibiotics 10(4):378 (DOI:10.3390/antibiotics10040378).

Willms IM, Bolz SH, Yuan J, Krafft L, Schneider D, Schöning I, Schrumpf M, Nacke H (2021) The ubiquitous soil verrucomicrobial clade ‘Candidatus Udaeobacter’ shows preferences for acidic pH. Environ Microbiol Rep (DOI:10.1111/1758-2229.13006).

Wolter LA, Wietz M, Ziesche L, Breider S, Leinberger J, Poehlein A, Daniel R, Schulz S, Brinkhoff T (2021) Pseudooceanicola algae sp. nov., isolated from the marine macroalga Fucus spiralis, shows genomic and physiological adaptations for an algae-associated lifestyle. Syst Appl Microbiol 44(1):126166 (DOI:10.1016/j.syapm.2020.126166).

Wolter LA, Mitulla M, Kalem J, Daniel R, Simon M, Wietz M (2021) CAZymes in Maribacter dokdonensis 62-1 from the Patagonian shelf: Genomics and physiology compared to related flavobacteria and a co-occurring Alteromonas strain. Front Microbiol 12:628055 (DOI:10.3389/fmicb.2021.628055).


Ahle CM, Stødkilde K, Afshar M, Poehlein A, Ogilvie LA, Söderquist B, Hüpeden J, Brüggemann H (2020) Staphylococcus saccharolyticus: An overlooked human skin colonizer. Microorganisms 8(8):1105 (DOI:10.3390/microorganisms8081105).

Alio I, Gudzuhn M, Pérez García P, Danso D, Schoelmerich M, Mamat U, Schaible UE, Steinmann J, Yero D, Gibert I, Kohl TA, Niemann S, Gröschel MI, Haerdter J, Hackl T, Vollstedt CH, Bömeke M, Egelkamp R, Daniel R, Poehlein A, Streit WR (2020) Phenotypic and transcriptomic analysis of seven clinical Stenotrophomonas maltophilia isolates identify a small set of shared and commonly regulated genes involved in biofilm lifestyle. Appl Environ Microbiol 86:e02038-20 (DOI:10.1128/AEM.02038-20).

Aloo BN, Mbega ER, Makumba BA, Friedrich I, Hertel R, Daniel R (2020) Whole-genome sequences of three plant growth-promoting rhizobacteria isolated from Solanum tuberosum L. rhizosphere in Tanzania. Microbiol Resour Announc 9(20):e00371-20 (DOI:10.1128/MRA.00371-20).

Baena Lozada LP, Hoppert M, Hertel R (2020) Phage vB_BmeM-Goe8 infecting Bacillus megaterium DSM319. Arch Virol 165:515–517 (DOI:10.1007/s00705-019-04513-5).

Ballau ff J, Zemp DC, Schneider D, Irawan B, Daniel R, Polle A (2020) Legacy effects overshadow tree diversity effects on soil fungal communities in oil palm-enrichment plantations. Microorganisms 8(10):E1577 (DOI:10.3390/microorganisms8101577).

Berkelmann D, Schneider D, Meryandini A, Daniel R (2020) Unravelling the effects of tropical land use conversion on the soil microbiome. Environ Microbiome 15:5 (DOI:10.1186/s40793-020-0353-3).

Berkelmann D, Schneider D, Hennings N, Meryandini A, Daniel R (2020) Soil bacterial community structures in relation to different oil palm management practices. Sci Data 7:421 (DOI:10.1038/s41597-020-00752-3).

Chibani CM, Roth O, Liesegang H, Wendling CC (2020) Genomic variation among closely related Vibrio alginolyticus strains is located on mobile genetic elements. BMC Genomics 21(1):354 (DOI:10.1186/s12864-020-6735-5).

Chibani CM, Hertel R, Hoppert M, Liesegang H, Wendling CC (2020) Closely related Vibrio alginolyticus strains encode an identical repertoire of Caudovirales-like regions and filamentous phages. Viruses 12(12):1359 (DOI:10.3390/v12121359).

Coffey MJ, Low I, Stelzer-Braid S, Wemheuer B, Garg M, Thomas T, Jaffe A, Rawlinson WD, Ooi CY (2020) The intestinal virome in children with cystic fibrosis differs from healthy controls. PLoS ONE 15(5):e0233557 (DOI:10.1371/journal.pone.0233557).

Czieborowski M, Hübenthal A, Poehlein A, Vogt I, Philipp B (2020) Genetic and physiological analysis of biofilm formation on different plastic surfaces by Sphingomonas sp. strain S2M10 reveals an essential function of sphingan biosynthesis. Microbiol 166(10):918-935 (DOI:10.1099/mic.0.000961).

Egelkamp R, Friedrich I, Hertel R, Daniel R (2020) From sequence to function: a new workflow for nitrilase identification. Appl Microbiol Biotechnol 104:4957–4970 (DOI:10.1007/s00253-020-10544-9).

Eze MO, Lütgert SA, Neubauer H, Balouri A, Kraft AA, Sieven A, Daniel R, Wemheuer B (2020) Metagenome assembly and metagenome-assembled genome sequences from a historical oil field located in Wietze, Germany. Microbiol Resour Announc 9(21):e00333-20 (DOI:10.1128/MRA.00333-20).

Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR (2020) Caproicibacter fermentans gen. nov., sp. nov., a new caproate- producing bacterium and emended description of the genus Caproiciproducens. Int J Syst Evol Microbiol 70(7):4269–4279 (DOI:10.1099/ijsem.0.004283).

Friedrich I, Hollensteiner J, Schneider D, Poehlein A, Hertel R, Daniel R (2020) First complete genome sequences of Janthinobacterium lividum EIF1 and EIF2 and their comparative genome analysis. Genome Biol Evol 12(10):1782-1788 (DOI:10.1093/gbe/evaa148).

Furrer AD, Bömeke M, Hoppert M, Hertel R (2020) Phage vB_BveM-Goe7 represents a new genus in the subfamily Bastillevirinae. Arch Virol 165(4):959-962 (DOI:10.1007/s00705-020-04546-1).

Fussmann D, von Hoyningen-Huene A, Reimer A, Schneider D, Babková H, Peticzka R, Maier A, Arp G, Daniel R, Meister P (2020) Authigenic formation of Ca–Mg carbonates in the shallow alkaline Lake Neusiedl, Austria. Biogeosciences 17:2085–2106 (DOI:10.5194/bg-17-2085-2020).

Gerke J, Frauendorf H, Schneider D, Wintergoller M, Hofmeister T, Poehlein A, Zebec Z, Takano E, Scrutton NS, Braus GH (2020) Production of the fragrance geraniol in peroxisomes of a product-tolerant baker's yeast. Front Bioeng Biotechnol 8:582052 (DOI:10.3389/fbioe.2020.582052).

Grass I, Kubitza C, Krishna VV, Corre MD, Mußhoff O, Pütz P, Drescher J, Rembold K, Ariyanti ES, Barnes AD, Brinkmann N, Brose U, Brümmer B, Buchori D, Daniel R, Darras KFA, Faust H, Fehrmann L, Hein J, Hennings N, Hidayat P, Hölscher D, Jochum M, Knohl A, Kotowska MM, Krashevska V, Kreft H, Leuschner C, Lobite NJS, Panjaitan R, Polle A, Potapov AM, Purnama E, Qaim M, Röll Al, Scheu S, Schneider D, Tjoa A, Tscharntke T, Veldkamp E, Wollni M (2020) Trade-offs between multifunctionality and profit in tropical smallholder landscapes. Nat Commun 11:1186 (DOI:10.1038/s41467-020-15013-5).

Heinrichs ME, Tebbe DA, Wemheuer B, Niggemann J, Engelen B (2020) Impact of viral lysis on the composition of bacterial communities and dissolved organic matter in deep-sea sediments. Viruses 12(9):922 (DOI:10.3390/v12090922).

Hetz SA, Poehlein A, Horn MA (2020) Whole-genome sequences of two new Caballeronia strains isolated from cryoturbated peat circles of the permafrost-affected eastern european tundra. Microbiol Resour Announc 9(31):e00731-20 (DOI:10.1128/MRA.00731-20).

Ho A, Mendes LW, Lee HJ, Kaupper T, Mo Y, Poehlein A, Bodelier PLE, Jia Z, Horn M (2020) Response of a methane-driven interaction network to stressor intensification. FEMS Microbiol Ecol 96(10):fiaa180 (DOI:10.1093/femsec/fiaa180).

Hollensteiner J, Poehlein A, Kloskowski P, Tammam Ali T, Daniel R (2020) Genome sequence of Komagataeibacter saccharivorans strain JH1, isolated from fruit flies. Microbiol Resour Announc 9(13):e00098-20 (DOI:10.1128/MRA.00098-20).

Hollensteiner J, Schneider D, Poehlein A, Daniel R (2020) Complete genome of Roseobacter ponti DSM 106830T. Genome Biol Evol 12(7):1013-1018 (DOI:10.1093/gbe/evaa114).

Kaupper T, Mendes LW, Lee HJ, Mo Y, Poehlein A, Jia Z, Horn MA, Ho A (2020) When the going gets tough: Emergence of a complex methane-driven interaction network during recovery from desiccation-rewetting. Soil Biol Biochem 153:108109 (DOI:10.1016/j.soilbio.2020.108109).

Klewing A, Koo BM , Krüger L, Poehlein A, Reuß D, Daniel R, Gross CA, Stülke J (2020) Resistance to serine in Bacillus subtilis: identification of the serine transporter YbeC and of a metabolic network that links serine and threonine metabolism. Environ Microbiol 22(8):3937-3949 (DOI:10.1111/1462-2920.15179).

Krüger L, Herzberg C, Warneke R, Poehlein A, Stautz J, Weiß M, Daniel R, Hänelt I, Stülke J (2020) Two ways to convert a low- to a high-affinity potassium channel: Control of Bacillus subtilis KtrCD by glutamate. J Bacteriol 202(12):e00138-20 (DOI:10.1128/JB.00138-20).

Müller K, Kubsch N, Marhan S, Mayer-Gruner P, Nassal P, Schneider D, Daniel R, Piepho H-P, Polle A and Kandeler E (2020) Saprotrophic and ectomycorrhizal fungi contribute differentially to organic P mobilization in beech-dominated forest ecosystems. Front For Glob Change 3:47 (DOI:10.3389/ffgc.2020.00047).

Nacke H, Kirck LL,Schwarz S, Schneider D, Poehlein A, Daniel R (2020) Metagenome sequences of a wastewater treatment plant digester sludge-derived enrichment culture. Microbiol Resour Announc 9(32):e00712-20 (DOI:10.1128/MRA.00712-20).

Nguyen DQ, Schneider D, Brinkmann N, Song B, Janz D, Schöning I, Daniel R, Pena R, Polle A (2020) Soil and root nutrient chemistry structure root-associated fungal assemblages in temperate forests. Environ Microbiol 22(8):3081-3095 (DOI:10.1111/1462-2920.15037).

Otte K, Kühne NM, Furrer AD, Baena Lozada LP, Lutz VT, Schilling T, Hertel R (2020) A CRISPR‐Cas9 tool to explore the genetics of Bacillus subtilis phages. Lett Appl Microbiol 71(6):588-595 (DOI:10.1111/lam.13349).

Perez MF, Kurth D, Farías ME, Soria MN, Castillo Villamizar GA, Poehlein A, Daniel R, Dib JR (2020) First report on the plasmidome from a high-altitude lake of the Andean Puna. Front Microbiol 11:1343 (DOI:10.3389/fmicb.2020.01343).

Poehlein A, Hollensteiner J, Dreyer A, Gavrilova I, Daniel R (2020) Complete genome sequence of Sporomusa termitida DSM 4440T. Microbiol Resour Announc 9(11):e00046-20 (DOI:10.1128/MRA.00046-20).

Rao SC, Esvaran M, Patole SK, Simmer KN, Gollow I, Keil A, Wemheuer B, Chen L, Conway PL (2020) Gut microbiota in neonates with congenital gastrointestinal surgical conditions: a prospective study. Pediatr Res 88:878-886 (DOI:10.1038/s41390-020-0824-7).

Redl S, Poehlein A, Esser C, Bengelsdorf FR, Jensen TØ, Jendresen CB, Tindall BJ, Daniel R, Dürre P, Nielsen AT (2020) Genome-based comparison of all species of the genus Moorella, and status of the species Moorella thermoacetica and Moorella thermoautotrophica. Front Microbiol 10:3070 (DOI:10.3389/fmicb.2019.03070).

Richts B, Hertel R, Potot S, Poehlein A, Daniel R, Schyns G, Pragai Z, Commichau FM (2020) Complete genome sequence of the prototrophic Bacillus subtilis subsp. subtilis strain SP1. Microbiol Resour Announc 9(32):e00825-20 (DOI:10.1128/MRA.00825-20).

Rummel PS, Pfeiffer B, Pausch J, Well R, Schneider D, Dittert K (2020) Maize root and shoot litter quality controls short-term CO2 and N2O emissions and bacterial community structure of arable soil. Biogeosciences 17:1181–1198 (DOI:10.5194/bg-2019-320).

Salgar-Chaparro SJ, Castillo-Villamizar G, Poehlein A, Daniel R, Machuca LL (2020) Complete genome sequence of Pseudomonas balearica strain EC28, an iron-oxidizing bacterium isolated from corroded steel. Microbiol Resour Announc 9(19):e00275-20 (DOI:10.1128/MRA.00275-20).

Salgar-Chaparro SJ, Castillo-Villamizar G, Poehlein A, Daniel R, Machuca LL (2020) Draft genome sequence of Enterobacter roggenkampii strain OS53, isolated from corroded pipework at an offshore oil production facility. Microbiol Resour Announc 9(34):e00583-20 (DOI:10.1128/MRA.00583-20).

Salgar-Chaparro SJ, Castillo-Villamizar G, Poehlein A, Daniel R, Machuca LL (2020) Complete genome sequence of Shewanella chilikensis strain DC57, isolated from corroded seal rings at a floating oil production system in Australia. Microbiol Resour Announc 9(38):e00584-20 (DOI:10.1128/MRA.00584-20).

Schneider D, Aßmann N, Wicke D, Poehlein A, Daniel R (2020) Metagenomes of wastewater at different treatment stages in Central Germany. Microbiol Resour Announc 9(15):e00201-20 (DOI:10.1128/MRA.00201-20).

Schneider D, Zühlke D, Petscheleit T, Poehlein A, Riedel K, Daniel R (2020) Complete genome sequence of Escherichia coli GW-AmxH19, isolated from hospital wastewater in Greifswald, Germany. Microbiol Resour Announc 9(21):e00279-20 (DOI:10.1128/MRA.00279-20).

Schroeder J, Jannoura R, Beuschel R, Pfeiffer B, Dyckmans J, Murugan R, Chavannavar S, Wachendorf CH, Joergensen RG (2020) Carbon use efficiency and microbial functional diversity in a temperate Luvisol and a tropical Nitisol after millet litter and N addition. Biol Fertil Soils 56:1139-1150 (DOI:10.1007/s00374-020-01487-4).

Schüler MA, Stegmann BA, Poehlein A, Daniel R, Dürre P (2020) Genome sequence analysis of the temperate bacteriophage TBP2 of the solvent producer Clostridium saccharoperbutylacetonicum N1-4 (HMT, ATCC 27021). FEMS Microbiol Lett 367(14):fnaa103 (DOI:10.1093/femsle/fnaa103).

Stødkilde K, Poehlein A, Brüggemann H (2020) Draft genome sequence of a new Staphylococcal species isolated from human skin. Microbiol Resour Announc 9(6):e01499-19 (DOI:10.1128/MRA.01499-19).

Tiede J, Diepenbruck M, Gadaub J, Wemheuer B, Daniel R, Scherber C (2020) Seasonal variation in the diet of the serotine bat (Eptesicus serotinus): A high-resolution analysis using DNA metabarcoding. Basic Appl Ecol 49:1-12 (DOI:10.1016/j.baae.2020.09.004).

Vendl C, Slavich E, Wemheuer B, Nelson T, Ferrari B, Thomas T, Rogers T (2020) Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast. Sci Rep 10:12645 (DOI:10.1038/s41598-020-69602-x).

Wemheuer F, Berkelmann D, Wemheuer B, Daniel R, Vidal S, Bisseleua Daghela HB, (2020) Agroforestry management systems drive the composition, diversity, and function of fungal and bacterial endophyte communities in Theobroma cacao leaves. Microorganisms 8(3):405 (DOI:10.3390/microorganisms8030405).

Wemheuer, F., Taylor, J.A., Daniel, R, Johnston E, Meinicke P, Thomas T, Wemheuer B (2020) Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences. Environ Microbiome 15:11 (DOI:10.1186/s40793-020-00358-7).

Willms IM, Yuan J, Penone C, Goldmann K, Vogt J, Wubet T, Schöning I, Schrumpf M, Buscot F, Nacke H (2020) Distribution of medically relevant antibiotic resistance genes and mobile genetic elements in soils of temperate forests and grasslands varying in land use. Genes 11(2):150 (DOI:10.3390/genes11020150).

Willms IM, Rudolph AY, Göschel I, Bolz SH, Schneider D, Penone C, Poehlein A, Schöning I, Nacke H (2020) Globally abundant “Candidatus Udaeobacter” benefits from release of antibiotics in soil and potentially performs trace gas scavenging. mSphere 5(4):e00186-20 (DOI:10.1128/mSphere.00186-20).

Winkler L, Münker MF, Brunotte S, Rohlmann L, Alfageme AD, Poehlein A, Hoppert M, Reitner J, Nacke H (2020) Metagenome-assembled genome sequences from an anoxygenic photosynthetic consortium involved in sulfur cycling. Microbiol Resour Announc 9(38):e00819-20 (DOI:10.1128/MRA.00819-20).

Wischer D, Schneider D, Poehlein A, Herrmann F, Oruc H, Meinhardt J, Wagner O, Kharin S, Novikova N, Haag R, Daniel R, Grohmann E (2020) Novel antimicrobial cellulose fleece inhibits growth of human-derived biofilm-forming Staphylococci during the SIRIUS19 simulated space mission. Front Microbiol 11:1626 (DOI:10.3389/fmicb.2020.01626).

Wübbeler JH, Oppermann-Sanio FB, Ockenfels A, Röttig A, Osthaar-Ebker A, Verbarg S, Poehlein A, Madkour MH, Al-Ansari AM, Almakishah NH, Daniel R, Steinbüchel A (2020) Corrigendum: Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil. Int J Syst Evol Microbiol 70(4):2955 (DOI:10.1099/ijsem.0.004039).


Bakenhus I, Wemheuer B, Akyol P, Giebel HA, Dlugosch L, Daniel R, Simon M (2019) Distinct relationships between fluorescence in situ hybridization and 16S rRNA gene- and amplicon-based sequencing data of bacterioplankton lineages. Syst Appl Microbiol 42(5):126000 (DOI:10.1016/j.syapm.2019.06.005).

Bengelsdorf FR, Poehlein A, Daniel R, Dürre P (2019) Genome sequence of the caproic acid-producing bacterium Caproiciproducens galactitolivorans BS-1(T) (JCM 30532). Microbiol Resour Announc 8(31):e00346-19 (DOI:10.1128/MRA.00346-19).

Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C (2019) Cobaviruses – a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems. ISME J 13:1404–1421 (DOI:10.1038/s41396-019-0362-7).

Brinkmann N, Schneider D, Sahner J, Ballauff J, Edy N, Barus H, Irawan B, Budi SW, Qaim M, Daniel R, Polle A (2019) Intensive tropical land use massively shifts soil fungal communities. Sci Rep 9:3403 (DOI:10.1038/s41598-019-39829-4).

Brüggemann H, Poehlein A, Brzuszkiewicz E, Scavenius C, Enghild JJ, Al-Zeer MA, Brinkmann V, Jensen A, Söderquist B (2019) Staphylococcus saccharolyticus isolated from blood cultures and prosthetic joint infections exhibits excessive genome decay. Front Microbiol 10:478 (DOI:10.3389/fmicb.2019.00478).

Castillo Villamizar GA, Nacke H, Boehning M, Herz K, Daniel R (2019) Functional metagenomics reveals an overlooked diversity and novel features of soil-derived bacterial phosphatases and phytases. mBio 10:e01966-18 (DOI:10.1128/mBio.01966-18).

Castillo Villamizar GA, Nacke H, Griese L, Tabernero L, Funkner K, Daniel R (2019) Characteristics of the first protein tyrosine phosphatase with phytase activity from a soil metagenome. Genes 10:101 (DOI:10.3390/genes10020101).

Castillo Villamizar GA, Funkner K, Nacke H, Foerster K, Daniel R (2019) Functional metagenomics reveals a new catalytic domain, the metallo-β-lactamase superfamily domain, associated with phytase activity. mSphere 4(3):e00167-19 (DOI:10.1128/mSphere.00167-19).

Chibani CM, Farr A, Klama S, Dietrich S, Liesegang H (2019) Classifying the unclassified: A phage classification method. Viruses 11(2):195 (DOI:10.3390/v11020195).

Dinter T, Geihser S, Gube M, Daniel R, Kuzyakov Y (2019) Impact of sea level change on coastal soil organic matter, priming effects and prokaryotic community assembly. FEMS Microbiol Ecol 95(1):fiz129 (DOI:10.1093/femsec/fiz129).

Dukunde A, Schneider D, Schmidt M, Veldkamp E , Daniel R (2019) Tree species shape soil bacterial community structure and function in temperate deciduous forests. Front Microbiol 10:1519 (DOI:10.3389/fmicb.2019.01519).

Egelkamp R, Zimmermann T, Schneider D, Hertel R, Daniel R (2019) Impact of nitriles on bacterial communities. Front Env Sci 7:103 (DOI:10.3389/fenvs.2019.00103).

Große C, Poehlein A, Blank K, Schwarzenberger C, Schleuder G, Herzberg M, Nies DH (2019) The third pillar of metal homeostasis in Cupriavidus metallidurans CH34: preferences are controlled by extracytoplasmic function sigma factors. Metallomics 11(2):291-316 (DOI:10.1039/C8MT00299A).

Gundlach J, Krüger L, Herzberg C, Turdiev A, Poehlein A, Tascón I, Weiß M, Hertel D, Daniel R, Hänelt I, Lee VT, Stülke J (2019) Sustained sensing in potassium homeostasis: Cyclic di-AMP controls potassium uptake by KimA at the levels of expression and activity. J Biol Chem 294(24):9605-9614 (DOI:10.1074/jbc.RA119.008774).

Hackenschmidt S, Bracharz F, Daniel R, Thürmer A, Bruder S, Kabisch J (2019) Effects of a high-cultivation temperature on the physiology of three different Yarrowia lipolytica strains. FEMS Yeast Res 19(7): foz068 (DOI:10.1093/femsyr/foz068).

Hollensteiner J, Poehlein A, Daniel R (2019) Complete genome sequence of Marinobacter sp. strain JH2, isolated from seawater of the Kiel Fjord. Microbiol Resour Announc 8(30):e00596-19 (DOI:10.1128/MRA.00596-19).

Langer SG, Gabris C, Einfalt D, Wemheuer B, Kazda M, Bengelsdorf FR (2019) Different response of bacteria, archaea and fungi to process parameters in nine full-scale anaerobic digesters. Microb Biotechnol 12(6):1210-1225 (DOI:10.1111/1751-7915.13409).

Lu M, Dukunde A, Daniel R (2019) Biochemical profiles of two thermostable and organic solvent-tolerant esterases derived from a compost metagenome. Appl Microbiol Biotechnol 103:3421-3437 (DOI:10.1007/s00253-019-09695-1).

Lüneberg K, Schneider D, Brinkmann N, Siebe C, Daniel R (2019) Land use change and water quality use for Irrigation alters drylands soil fungal community in the Mezquital Valley, Mexico. Front Microbiol 10:1220 (DOI:10.3389/fmicb.2019.01220).

Lurgi M, Thomas T, Wemheuer B, Webster NS, Montoya JM (2019) Modularity and predicted functions of the global sponge-microbiome network. Nat Commun 10(1):992 (DOI:10.1038/s41467-019-08925-4).

Nordmann B, Schilling T, Hoppert M, Hertel R (2019) Complete genome sequence of the virus isolate vB_BthM-Goe5 infecting Bacillus thuringiensis. Arch Virol 164(5):1485-1488 (DOI:10.1007/s00705-019-04187-z).

Ozkan J, Willcox M, Wemheuer B, Wilcsek G, Coroneo M, Thomas T (2019) Biogeography of the human ocular microbiota. Ocul Surf 17(1):111-118 (DOI:10.1016/j.jtos.2018.11.005).

Pinter N, Hach CA, Hampel M, Rekhter D, Zienkiewicz K, Feussner I, Poehlein A, Daniel R, Finkernagel F, Heimel K (2019) Signal peptide peptidase activity connects the unfolded protein response to plant defense suppression by Ustilago maydis. PLoS Pathogens 15:e1007734 (DOI:10.1371/journal.ppat.1007734).

Pohlner M, Dlugosch L, Wemheuer B, Mills H, Engelen B, Reese BK (2019) The majority of active Rhodobacteraceae in marine sediments belong to uncultured genera: a molecular approach to link their distribution to environmental conditions. Front Microbiol 10:659 (DOI:10.3389/fmicb.2019.00659).

Pratama R, Schneider D, Böer T, Daniel R (2019) First insights into bacterial gastrointestinal tract communities of the Eurasian Beaver (Castor fiber). Front Microbiol 10:1646 (DOI:10.3389/fmicb.2019.01646).

Reuß DR, Faßhauer P, Mroch PJ, Ul-Haq I, Koo BM, Poehlein A, Gross CA, Daniel R, Brantl S, Stülke J (2019) Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis. Nucleic Acids Res 47(10):5231–5242 (DOI:10.1093/nar/gkz260).

Rudolph K , Fichtel C, Schneider D, Heistermann M, Koch F, Daniel R, Kappeler PM (2019) One size fits all? Relationships among group size, health, and ecology indicate a lack of an optimal group size in a wild lemur population. Behav Ecol Sociobiol 73:132 (DOI:10.1007/s00265-019-2746-0).

Schröter K, Wemheuer B, Pena R, Schöning I, Ehbrecht M, Schall P, Ammer C, Daniel R, Polle A (2019) Assembly processes of trophic guilds in the root mycobiome of temperate forests. Mol Ecol 28:348-364 (DOI:10.1111/mec.14887).

Schulz G, Schneider D, Brinkmann N, Edy N, Daniel R, Polle A, Scheu S, Krashevska V (2019) Changes in trophic groups of protists with conversion of rainforest into rubber and oil palm plantations. Front Microbiol 10:240 (DOI:10.3389/fmicb.2019.00240).

Song W, Wemheuer B, Zhang S, Steensen K, Thomas T (2019) MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches. Microbiome 7(1):36 (DOI:10.1186/s40168-019-0649-y).

Steinert G, Wemheuer B, Janussen D, Erpenbeck D, Daniel R, Simon M, Brinkhoff T, Schupp PJ (2019) Prokaryotic diversity and community patterns in Antarctic continental shelf sponges. Front Mar Sci 6:297 (DOI:10.3389/fmars.2019.00297).

von Hoyningen-Huene AJE, Schneider D, Fussmann D, Reimer A, Arp G, Daniel R (2019) Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria. Sci Data 6:163 (DOI:10.1038/s41597-019-0172-9).

Wemheuer F, von Hoyningen-Huene AJE, Pohlner M, Degenhardt J, Engelen B, Daniel R, Wemheuer B (2019) Primary production in the water column as major structuring element of the biogeographical distribution and function of Archaea in deep-sea sediments of the Central Pacific Ocean. Archaea 2019:ID 3717239 (DOI:10.1155/2019/3717239).

Wemheuer F, Wemheuer B, Daniel R, Vidal S (2019) Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands. Sci Rep 9:14183 (DOI:10.1038/s41598-019-50540-2).

Wemheuer B, Thomas T, Wemheuer F (2019) Fungal endophyte communities of three agricultural important grass species differ in their response towards management regimes. Microorganisms 7(2):37 (DOI:10.3390/microorganisms7020037).

Wicke D, Schulz LM, Lentes S, Scholz P, Poehlein A, Gibhardt J, Daniel R, Ischebeck T, Commichau FM (2019) Identification of the first glyphosate transporter by genomic adaptation. Environ Microbiol 21(4):1287-1305 (DOI:10.1111/1462-2920.14534).

Wilkes Walburn J, Wemheuer B, Thomas T, Copeland E, O'Connor W, Booth M, Fielder S, Egan S (2019) Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi). Microb Biotechnol 12(2):275-288 (DOI:10.1111/1751-7915.13323).

Willms IM, Kamran A, Aßmann NF, Krone D, Bolz SH, Fiedler F, Nacke H (2019) Discovery of novel antibiotic resistance determinants in forest and grassland soil metagenomes. Front Microbiol 10:460 (DOI:10.3389/fmicb.2019.00460).

Yücel O, Borgert SR, Poehlein A, Niermann K, Philipp B (2019) The 7α-hydroxysteroid dehydratase Hsh2 is essential for anaerobic degradation of the steroid skeleton of 7α-hydroxyl bile salts in the novel denitrifying bacterium Azoarcus sp. strain Aa7. Environ Microbiol 21(2):800-813 (DOI:10.1111/1462-2920.14508).

Zhang S, Song W, Wemheuer B, Reveillaud J, Webster N, Thomas T (2019) Comparative genomics reveals ecological and evolutionary insights into sponge-associated Thaumarchaeota. mSystems 4(4):288 (DOI:10.1128/mSystems.00288-19).


Amiri Moghaddam J, Poehlein A, Fisch K, Alanjary M, Daniel R, König GM, Schäberle TF (2018) Draft genome sequences of the obligatory marine myxobacterial strains Enhygromyxa salina SWB005 and SWB007. Genome Announc 6(17):e00324-18 (DOI:10.1128/genomeA.00324-18).

Amiri Moghaddam J, Crüsemann M, Alanjar M, Harms H, Céspedes AD-C, Blom J, Poehlein A, Ziemert N, König GM, Schäberle TF (2018) Analysis of the genome and metabolome of marine myxobacteria reveals high potential for biosynthesis of novel specialized metabolites. Sci Rep 8:16600 (DOI:10.1038/s41598-018-34954-y).

Bakenhus I, Voget S, Poehlein A, Brinkhoff T, Daniel R, Simon M (2018) Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom. Stand Genomic Sci 13:7 (DOI:10.1186/s40793-018-0311-5).

Bengelsdorf FR, Beck MH, Erz C, Hoffmeister S, Karl MM, Riegler P, Wirth S, Poehlein A, Weuster-Botz D, Dürre P (2018) Bacterial anaerobic synthesis gas (syngas) and CO2+H2 fermentation. Adv Appl Microbiol 103:143-221 (DOI:10.1016/bs.aambs.2018.01.002).

Berkelmann D, Schneider D, Engelhaupt M, Heinemann M, Christel S, Wijayanti M, Meryandini A, Daniel R (2018) How rainforest conversion to agricultural systems in Sumatra (Indonesia) affects active soil bacterial communities. Front Microbiol 9:2381 (DOI:10.3389/fmicb.2018.02381).

Brüggemann H, Jensen A, Nazipi S, Aslan H, Meyer RL, Poehlein A, Brzuszkiewicz E, Al-Zeer MA, Brinkmann V, Söderquist B (2018) Pan-genome analysis of the genus Finegoldia identifies two distinct clades, strain-specific heterogeneity, and putative virulence factors. Sci Rep 8:266 (DOI:10.1038/s41598-017-18661-8).

Brüggemann H, Migliorini LB, Oliveira de Sales R, Mariko Koga PC, de Souza AV, Jensen A, Poehlein A, Brzuszkiewicz E, Doi AM, Pasternak J, Martino MDV, Severino P (2018) Comparative genomics of non-outbreak Pseudomonas aeruginosa strains underlines genome plasticity and geographic relatedness of the global clone ST235. Genome Biol Evol 10(7):1852-1857 (DOI:10.1093/gbe/evy139).

Daniel R, Simon M, Wemheuer B (2018) Editorial: Molecular ecology and genetic diversity of the Roseobacter clade. Front Microbiol 9:1185 (DOI:10.3389/fmicb.2018.01185).

Dib JR, Perez MF, Schuldes J, Poehlein A, Wagenknecht M, Farías ME, Meinhardt F, Daniel R (2018) Complete genome sequences of pLMA1 and pLMA7, two large linear plasmids of Micrococcus strains isolated from a high-altitude lake in Argentina. Genome Announc 6(8):e00010-18 (DOI:10.1128/genomeA.00010-18).

Djukic M, Erler S, Leimbach A, Grossar D, Charrière J-D, Gauthier L, Hartken D, Dietrich S, Nacke H, Daniel R, Poehlein A (2018) Comparative genomics and description of putative virulence factors of Melissococcus plutonius, the causative agent of European foulbrood disease in honey bees. Genes 9:419 (DOI:10.3390/genes9080419).

Erler S, Lewkowski O, Poehlein A, Forsgren E (2018) The curious case of Achromobacter eurydice, a Gram-variable pleomorphic bacterium associated with European Foulbrood disease in honeybees. Microb Ecol 75(1):1-6 (DOI:10.1007/s00248-017-1007-x).

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H (2018) Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile. BMC Genomics 19:1 (DOI:10.1186/s12864-017-4368-0).

Hollensteiner J, Poehlein A, Granzow S, Liesegang H, Daniel R, Vidal S, Wemheuer F (2018) Draft genome sequence of the endophyte Bacillus mycoides strain GM5LP isolated from Lolium perenne. Genome Announc 6(4):e01517 (DOI:10.1128/genomeA.01517-17).

Köbke S, Senbayram M, Pfeiffer B, Nacke H, Dittert K (2018) Post-harvest N2O and CO2 emissions related to plant residue incorporation of oilseed rape and barley straw depend on soil NO3- content. Soil Till Res 179:105-113 (DOI:10.1016/j.still.2018.01.013).

Kremp F, Poehlein A, Daniel R, Müller V (2018) Methanol metabolism in the acetogenic bacterium Acetobacterium woodii. Environ Microbiol 20(12):4369-4384 (DOI:10.1111/1462-2920.14356).

Lüneberg K, Schneider D, Siebe C, Daniel R (2018) Drylands soil bacterial community is affected by land use change and different irrigation practices in the Mezquital Valley, Mexico. Sci Rep 8:1413 (DOI:10.1038/s41598-018-19743-x).

Meinert C, Schürmann M, Domeyer JE, Poehlein A, Daniel R, Steinbüchel A (2018) The unexpected function of a Flavin-dependent oxidoreductase (Fox) from Variovorax paradoxus TBEA6. FEMS Microbiol Lett 365(6):fny011 (DOI:10.1093/femsle/fny011).

Nasfi Z, Poehlein A, Harms H, Goralski E, Fisch KM, Daniel R, König GM, Schäberle TF, Bachoual R (2018) Draft genome sequence of Bacillus sp. strain M21, isolated from the arid area of Matmata, Tunisia. Genome Announc 6(17):e00323-18 (DOI:10.1128/genomeA.00323-18).

Ozkan J, Coroneo M, Willcox M, Wemheuer B, Thomas T (2018) Identification and visualization of a distinct microbiome in ocular surface conjunctival tissue. Invest Ophthalmol Vis Sci 59(10):4268-4276 (DOI:10.1167/iovs.18-24651).

Poehlein A, Hollensteiner J, Granzow S, Wemheuer B, Vidal S, Wemheuer F (2018) First insights into the draft genome sequence of the endophyte Paenibacillus sp. strain GM1FR, isolated from Festuca rubra. Genome Announc 6(4):e01516 (DOI:10.1128/genomeA.01516-17).

Poehlein A, Heym D, Quitzke V, Fersch J, Daniel R, Rother M (2018) Complete genome sequence of the Methanococcus maripaludis type strain JJ (DSM 2067), a model for selenoprotein synthesis in Archaea. Genome Announc 6(14):e00237-18 (DOI:10.1128/genomeA.00237-18).

Poehlein A, Bolz S, Fischer B, Daniel R (2018) First insight into the genome sequence of Clostridium vincentii DSM 10228, isolated from sediment of the McMurdo Ice Shelf, Antarctica. Genome Announc 6(16):e00334-18 (DOI:10.1128/genomeA.00334-18).

Poehlein A, Keyl A, Milsch JC, Daniel R (2018) Draft genome sequence of the thermophilic acetogen Moorella humiferrea DSM 23265. Genome Announc 6(17):e00357-18 (DOI:10.1128/genomeA.00357-18).

Poehlein A, Hettwer E, Mohnike L, Daniel R (2018) First insights into the genome sequence of Clostridium thermopalmarium DSM 5974, a butyrate-producing bacterium isolated from palm wine. Genome Announc 6(17):e00338-18 (DOI:10.1128/genomeA.00338-18).

Poehlein A, Bremekamp R, Lutz VT, Schulz LM, Daniel R (2018) Draft genome sequence of the butanoic acid-producing bacterium Clostridium luticellarii DSM 29923, used for strong aromatic Chinese liquor production. Genome Announc 6(18):e00377-18 (DOI:10.1128/genomeA.00377-18).

Poehlein A, Neubauer H, Niemeyer P, Daniel R (2018) First insight into the genome sequence of Clostridium liquoris DSM 100320, a butyrate- and ethanol-producing bacterium. Genome Announc 6(18):e00376-18 (DOI:10.1128/genomeA.00376-18).

Poehlein A, Böer T, Steensen K, Daniel R (2018) Draft genome sequence of the hydrogenogenic carboxydotroph Moorella stamsii DSM 26271. Genome Announc 6(18):e00345-18 (DOI:10.1128/genomeA.00345-18).

Poehlein A, Schneider D, Soh M, Daniel R, Seedorf H (2018) Comparative genomic analysis of members of the genera Methanosphaera and Methanobrevibacter reveals distinct clades with specific potential metabolic functions. Archaea 2018:Article ID 7609847 (DOI:10.1155/2018/7609847).

Reuß DR, Rath H, Thürmer A, Benda M, Daniel R, Völker U, Mäder U, Commichau FM, Stülke J (2018) Changes of DNA topology affect the global transcription landscape and allow rapid growth of a Bacillus subtilis mutant lacking carbon catabolite repression. Metab Eng 45:171-179 (DOI:10.1016/j.ymben.2017.12.004).

Sann C, Wemheuer F, Beaurepaire A, Daniel R, Erler S, Vidal S (2018) Preliminary investigation of species diversity of rice hopper parasitoids in Southeast Asia. Insects 9:19 (DOI:10.3390/insects9010019).

Schilling T, Hoppert M, Daniel R, Hertel R (2018) Complete genome sequence of vB_BveP-Goe6, a virus infecting Bacillus velezensis FZB42. Genome Announc 6(8):e00008-18 (DOI:10.1128/genomeA.00008-18).

Schilling T, Hoppert M, Hertel R (2018) Genomic analysis of the recent viral isolate vB_BthP-Goe4 reveals increased diversity of φ29-Like Phages. Viruses 10(11):624 (DOI:10.3390/v10110624).

Schilling T, Dietrich S, Hoppert M, Hertel R (2018) A CRISPR-Cas9-based toolkit for fast and precise in vivo genetic engineering of Bacillus subtilis phages. Viruses 10(5):241 (DOI:10.3390/v10050241).

Seugendo M, Janssen I, Lang V, Hasibuan I, Bohne W, Cooper P, Daniel R, Gunka K, Kusumawati RL, Mshana SE, von Müller L, Okamo B, Ortlepp JR, Overmann J, Riedel T, Rupnik M, Zimmermann O, Groß U (2018) Prevalence and strain characterization of Clostridioides (Clostridium) difficile in representative regions of Germany, Ghana, Tanzania and Indonesia - a comparative multi-Center cross-sectional study. Front Microbiol 9:1843 (DOI:10.3389/fmicb.2018.01843).

Singh N, Herbig E, Hertel R (2018) Enzyme aus der Natur - Reinstwasser als Grundlage für Metagenomik. GIT-Labor 06.03.2018 (abstract)

Streit W, Chow J. Jaeger K-E, Katzke N, Koch R, Borchert M, Bj’rnvad M, Roggenbuck M, Lippold F, Golyshin P, Golyshina O, Tran H, Ferrer M, Daniel R, Hollensteiner J (2018) A metagenomic collection of novel and highly efficient biocatalysts for industrial biotechnology. Impact 5:82-84 (DOI:10.21820/23987073.2018.5.82).

Ullrich SR, Poehlein A, Levicánc G, Mühling M, Schlömann M (2018) Iron targeted transcriptome study draws attention to novel redox protein candidates involved in ferrous iron oxidation in “Ferrovum” sp. JA12. Res Microbiol 169(20):618-627 (DOI:10.1016/j.resmic.2018.05.009).

Wemheuer F, Hollensteiner J, Poehlein A, Liesegang H, Daniel R, Wemheuer B (2018) Draft genome sequence of the endophyte Bacillus mycoides strain GM6LP isolated from Lolium perenne. Genome Announc 6(5):e00011 (DOI:10.1128/genomeA.00011-18).

Wemheuer F, Wemheuer B, Hollensteiner J, Daniel R, Poehlein A (2018) Draft genome sequence of the endophyte Paenibacillus sp. strain GM2FR isolated from Festuca rubra. Genome Announc 6(6):e00017 (DOI:10.1128/genomeA.00017-18).

Zhang Q, Poehlein A, Hollensteiner J, Daniel R (2018) Draft genome sequence of Komagataeibacter maltaceti LMG 1529T, a vinegar-producing acetic acid bacterium isolated from malt vinegar brewery acetifiers. Genome Announc 6(16):e00330-18 (DOI:10.1128/genomeA.00330-18).


Ammer C, Schall P, Gossner MM, Heinrichs S, Boch S, Prati D, Jung K, Baumgartner V, Blaser S, Böhm S, Buscot F, Daniel R, Goldmann K, Kaiser K, Kahl T, Lange M, Müller J, Overmann J, Renner S C, Schulze E-D, Sikorski J, Tschapka M, Türke M, Weisser WW, Wemheuer B, Wubet T, Fischer M (2017) Waldbewirtschaftung und Biodiversität: Vielfalt ist gefragt. Allgemeine Forstzeitschrift/Der Wald 72(17):20-25

Barnes AD, Allen K, Kreft H, Corre MD, Jochum M, Veldkamp E, Clough Y, Daniel R, Darras K, Denmead LH, Haneda NF, Hertel D, Knohl A, Kotowska MM, Kurniawan S, Meijide A, Rembold K, Prabowo WE, Schneider D, Tscharntke T, Brose U (2017) Direct and cascading impacts of tropical land-use change on multitrophic biodiversity. Nat Ecol Evol 1:1511-1519 (DOI:10.1038/s41559-017-0275-7).

Bengelsdorf F, Poehlein A, Flitsch SK, Linder S, Schiel-Bengelsdorf B, Stegmann BA, Krabben P, Green E, Zhang Y, Minton N, Dürre P (2017) Host organisms: Clostridium acetobutylicum / Clostridium beijerinckii and related organisms. In: Industrial Biotechnology: Microorganisms; Wittman C & Liao JC (Eds), Part III - Exploiting anaerobic biosynthetic power, Chapter 9 (DOI:10.1002/9783527807796.ch9).

Braun C, Thürmer A, Daniel R, Schultz AK, Bulla I, Schirrmeier H, Mayer D, Neubert A, Czerny CP (2017) Genetic variability of myxoma virus genomes. J Virol 91(4):pii: e01570-16 (DOI:10.1128/JVI.01570-16).

Chibani CM, Poehlein A, Roth O, Liesegang H, Wendling CC (2017) Draft genome sequence of Vibrio splendidus DSM 19640. Genome Announc 5(48):e01368 (DOI:10.1128/genomeA.01368-17).

Dannheim H, Riedel T, Neumann-Schaal M, Bunk B, Schober I, Spröer C, Chibani CM, Gronow S, Liesegang H, Overmann J, Schomburg D (2017) Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and Clostridium difficile 630. J Med Microbiol 66(3):286-293 (DOI:10.1099/jmm.0.000427).

Davidsson S, Carlsson J, Mölling P, Gashi N, Andren O, Andersson S-O, Brzuszkiewicz E, Poehlein A, Al-Zeer M, Brinkmann V, Scavenius C, Nazipi S, Söderquist B, Brüggemann H (2017) Prevalence of Flp pili-encoding plasmids in Cutibacterium acnes isolates obtained from prostatic tissue. Front Microbiol 8:2241 (DOI:10.3389/fmicb.2017.02241).

Dogs M, Wemheuer B, Wolter L, Bergen N, Daniel R, Simon M, Brinkhoff T (2017) Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle. Syst Appl Microbiol 40(6):370-382 (DOI:10.1016/j.syapm.2017.05.006).

Dormeyer M, Lübke AL, Müller P, Lentes S, Reuß DR, Thürmer A, Stülke J, Daniel R, Brantl S, Commichau FM (2017) Hierarchical mutational events compensate for glutamate auxotrophy of a Bacillus subtilis gltC mutant. Environ Microbiol Rep 9(3):279-289 (DOI:10.1111/1758-2229.12531).

Dukunde A, Schneider D, Lu M, Brady S, Daniel R (2017) A novel, versatile family IV carboxylesterase exhibits high stability and activity in a broad pH spectrum. Biotechnol Lett 39(4):577-587 (DOI:10.1007/s10529-016-2282-1).

Ebert M, Laass S, Thürmer A, Roselius L, Eckweiler D, Daniel R, Härtig E and Jahn D (2017) FnrL and three Dnr regulators are used for the metabolic adaptation to low oxygen tension in Dinoroseobacter shibae. Front Microbiol 8:642 (DOI:10.3389/fmicb.2017.00642).

Egelkamp R, Schneider D, Hertel R, Daniel R (2017) Nitrile-degrading bacteria isolated from compost. Front Env Sci 5:56 (DOI:10.3389/fenvs.2017.00056).

Gabris C, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Genome sequence of Enterococcus faecalis strain CG_E. Genome Announc 5(2):e01488-16 (DOI:10.1128/genomeA.01488-16).

Gabris C, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Genome sequence of Lactobacillus sunkii strain CG_D. Genome Announc 5(2):e01487-16 (DOI:10.1128/genomeA.01487-16).

Granzow S, Kaiser K, Wemheuer B, Pfeiffer B, Daniel R, Vidal S Wemheuer F (2017) The effects of cropping regimes on fungal and bacterial communities of wheat and faba bean in a greenhouse pot experiment differ between plant species and compartment. Front Microbiol 8:902 (DOI:10.3389/fmicb.2017.00902).

Gundlach J, Herzberg C, Kaever V, Gunka K, Hoffmann T, Weiß M, Gibhardt J, Thürmer A, Hertel D, Daniel R, Bremer E, Commichau FM, Stülke J (2017) Control of potassium homeostasis is an essential function of the second messenger cyclic di-AMP in Bacillus subtilis. Sci Signal 10(475):eaal3011 (DOI:10.1126/scisignal.aal3011).

Gundlach J, Herzberg C, Hertel D, Thürmer A, Daniel R, Link H, Stülke J (2017) Adaptation of Bacillus subtilis to life at extreme potassium limitation. mBio 8(4):e00861-17 (DOI:10.1128/mBio.00861-17).

Harms H, Poehlein A, Thürmer A, König GM, Schäberle TF (2017) Draft genome sequence of Zobellia sp. strain OII3, isolated from the coastal zone of the Baltic Sea. Genome Announc 5(36):e00737-17 (DOI:10.1128/genomeA.00737-17).

Hehemann J-H, Truong LV, Unfried F, Welsch N, Kabisch J, Heiden SE, Junker S, Becher D, Thürmer A, Daniel R, Amann R and Schweder T (2017) Aquatic adaptation of a laterally acquired pectin degradation pathway in marine Gammaproteobacteria. Environ Microbiol 19(6):2320-2333 (DOI:10.1111/1462-2920.13726).

Hertel R, Meyerjürgens S, Voigt B, Liesegang H, Volland S (2017) Small RNA mediated repression of subtilisin production in Bacillus licheniformis. Sci Rep 7:5699 (DOI:10.1038/s41598-017-05628-y).

Hollensteiner J, Wemheuer F, Harting R, Kolarzyk A, Verlerio-Diaz S, Poehlein A, Brzuszkiewicz E, Nesemann K, Braus-Stromeyer S, Braus G, Daniel R, Liesegang H (2017) Bacillus thuringiensis and Bacillus weihenstephanensis inhibit the growth of phytopathogenic Verticillium species. Front Microbiol 7:2171 (DOI:10.3389/fmicb.2016.02171).

Hollensteiner J, Poehlein A, Daniel R, Liesegang H, Vidal S, Wemheuer F (2017) Draft genome sequence of Bacillus pumilus strain GM3FR, an endophyte isolated from aerial plant tissues of Festuca rubra L. Genome Announc 5(13):e00085-17 (DOI:10.1128/genomeA.00085-17).

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosentstiel P, Schulenburg H, Liesegang H (2017) Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18246. Stand Genomic Sci 12:48 (DOI:10.1186/s40793-017-0259-x).

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H (2017) Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247. J Biotechnol 260:48-52 (DOI:10.1016/j.jbiotec.2017.09.003).

Humphreys JR, Daniel R, Poehlein A (2017) Insights into the genome of the anaerobic acetogen Sporomusa silvacetica DSM 10669. Genome Announc 5(38):e00983-17 (DOI:10.1128/genomeA.00983-17).

Humphreys JR, Daniel R, Poehlein A (2017) Genome sequence of the homoacetogenic, Gramn-negative, endospore-forming bacterium Sporomusa acidovorans DSM 3132. Genome Announc 5(38):e00981-17 (DOI:10.1128/genomeA.00981-17).

Jag V, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Genome sequencing and description of Oerskovia enterophila VJag, an agar- and cellulose-degrading bacterium. Stand Genomic Sci 12:30 (DOI:10.1186/s40793-017-0244-4).

Karl MM, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Complete genome sequence of the autotrophic acetogen Clostridium formicaceticum DSM 92T using nanopore and Illumina sequencing data. Genome Announc 5(21):e00423-17 (DOI:10.1128/genomeA.00423-17).

Leimbach A, Poehlein A, Vollmers J, Görlich D, Daniel R, Dobrindt U (2017) No evidence for a bovine mastitis Escherichia coli pathotype. BMC Genomics 18:359 (DOI:10.1186/s12864-017-3739-x).

Muth C, Buchholz M, Schmidt C, Volland S, Meinhardt F (2017) Genetic evidence for a novel competence inhibitor in the industrially important Bacillus licheniformis. AMB Express 7:149 (DOI:10.1186/s13568-017-0447-5).

Nacke H, Daniel R, Poehlein A (2017) Genome sequence of creatinine-fermenting Tissierella creatinophila strain KRE 4T (DSM 6911). Genome Announc 5(12):e00051-17 (DOI:10.1128/genomeA.00051-17).

Nacke H, Schöning I, Schindler M, Schrumpf M, Daniel R, Nicol GW, Prosser JI (2017) Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity. FEMS Microbiol Ecol 93:11 (DOI:10.1093/femsec/fix144).

Peters B, Mientus M, Kostner D, Daniel R, Liebl W, Ehrenreich A (2017) Expression of membrane-bound dehydrogenases from a mother of vinegar metagenome in Gluconobacter oxydans. Appl Microbiol Biotechnol 101(21):7901-7912 (DOI:10.1007/s00253-017-8479-y).

Poehlein A, Najdenski H, Simeonova DD (2017) Draft genome sequence of Flavobacterium succinicans strain DD5b. Genome Announc 5(2):e01492-16 (DOI:10.1128/genomeA.01492-16).

Poehlein A, Galperin MY, Andreesen JR, Daniel R (2017) Genome sequence of uric acid-fermenting Eubacterium angustum DSM 1989T (MK-1). Genome Announc 5(2):e01439-16 (DOI:10.1128/genomeA.01439-16).

Poehlein A, Montoya Solano JD, Flitsch SK, Krabben P, Winzer K, Reid SJ, Jones DT, Green E, Minton NP, Daniel R, Dürre P (2017) Microbial solvent formation revisited by comparative genome analysis. Biotechnol Biofuels 10:58 (DOI:10.1186/s13068-017-0742-z).

Poehlein A, Najdenski H, Simeonova DD (2017) Draft genome sequence of Klebsiella pneumoniae subsp. pneumoniae ATCC 9621. Genome Announc 5(12):e01718-16 (DOI:10.1128/genomeA.01718-16).

Poehlein A, Berg A, Welsing G, Daniel R (2017) First insights into the genome sequence of the alkaliphilic thermotolerant bacterium Clostridium thermoalcaliphilum JW/YL23-2(T). Genome Announc 5(20):e00368-17 (DOI:10.1128/genomeA.00368-17).

Poehlein A, Anbalagan A, Nagel A, Daniel R (2017) First insight into the genome sequence of Clostridium thermobutyricum DSM 4928, a butyrate-producing moderate thermophile. Genome Announc 5(20):e00367-17 (DOI:10.1128/genomeA.00367-17).

Poehlein A, Funkner K, Schüler MA, Daniel R (2017) First insights into the genome sequence of the cellulolytic bacterium Clostridium hungatei DSM 14427. Genome Announc 5(20):e00363-17 (DOI:10.1128/genomeA.00363-17).

Poehlein A, Daniel R, Seedorf H (2017) The draft genome of the non-host-associated Methanobrevibacter arboriphilus strain DH1 encodes a large repertoire of adhesin-like proteins. Archaea 2017:Article ID 4097425 (DOI:10.1155/2017/4097425).

Poehlein A, Gippert AL, Bierenbroodspot MJ, Daniel R (2017) First insights into the genome sequence of Clostridium oryzae DSM 28571, isolated from the soil of a Japanese rice field. Genome Announc 5(24):e00539-17 (DOI:10.1128/genomeA.00539-17).

Poehlein A, Höche N, Mehr A, Daniel R (2017) First insights into the genome of the Cr(VI)-reducing bacterium Clostridium chromiireducens DSM 23318. Genome Announc 5(22):e00420-17 (DOI:10.1128/genomeA.00420-17).

Poehlein A, Yutin N, Daniel R, Galperin MY (2017) Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.. Int J Syst Evol Microbiol 67(8):2711-2719 (DOI:10.1099/ijsem.0.002008).

Poehlein A, Daniel R, Thürmer A, Bollinger A, Thies S, Katzke N, Jaeger KE (2017) First insights into the genome sequence of Pseudomonas oleovorans DSM 1045. Genome Announc 5(32):e00774-17 (DOI:10.1128/genomeA.00774-17).

Poehlein A, Wübbeler JH, Daniel R, Steinbüchel A (2017) Draft genome sequences of Sphingomonas mucosissima DSM 17494 and Sphingomonas dokdonensis DSM 21029. Genome Announc 5(35):e00889-17 (DOI:10.1128/genomeA.00889-17).

Pohlner M, Degenhardt J, von Hoyningen-Huene AJE, Wemheuer B, Erlmann N, Schnetger B, Badewien TH, Engelen B (2017) The biogeographical distribution of benthic Roseobacter group members along a Pacific transect Is structured by nutrient availability within the sediments and pprimary production in different oceanic provinces. Front Microbiol 8:2550 (DOI:10.3389/fmicb.2017.02550).

Ponnudurai R, Sayavedra L, Kleiner M, Heiden SE, Thürmer A, Felbeck H, Schlüter R, Sievert SM, Daniel R, Schweder T, Markert S (2017) Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont. Stand Genomic Sci 12:50 (DOI:10.1186/s40793-017-0266-y).

Reuß DR, Altenbuchner J, Mäder U, Rath H, Ischebeck T, Sappa PK, Thürmer A, Guerin C, Nicolas P, Steil L, Zhu B, Feussner I, Klumpp S, Daniel R, Commichau FM, Völker U, Stülke J (2017) Large-scale reduction of the Bacillus subtilis genome: Consequences for the transcriptional network, resource allocation, and metabolism. Genome Res 27(2):289-299 (DOI:10.1101/gr.215293.116).

Reyes C, Schneider D, Thürmer A, Kulkarni A, Lipka M, Sztejrenszus SY, Böttcher ME, Daniel R, Friedrich MW (2017) Potentially active iron, sulfur and sulfate reducing bacteria in Skagerrak and Bothnian Bay sediments. Geomicrobiol J 34(10):840-850 (DOI:10.1080/01490451.2017.1281360).

Riedel T, Wetzel D, Hofmann JD, Plorin SPEO, Dannheim H, Berges M, Zimmermann O, Bunk B, Schober I, Spröer C, Liesegang H, Jahn D, Overmann J, Groß U, Neumann-Schaal M (2017) High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates. Int J Med Microbiol 307(6):311-320 (DOI:10.1016/j.ijmm.2017.05.007).

Schneider D, Wemheuer F, Pfeiffer B, Wemheuer B (2017) Extraction of total DNA and RNA from marine filter samples and generation of a cDNA as universal template for marker gene studies. Methods Mol Biol 1539:13-22 (DOI:10.1007/978-1-4939-6691-2_2).

Schneider D, Thürmer A, Gollnow K, Lugert R, Gunka K, Groß U, Daniel R (2017) Gut bacterial communities of diarrheic patients with indications of Clostridioides difficile infection. Sci. Data 4:170152 (DOI:10.6084/m9.figshare.c.3877591.v1).

Simon C, Daniel R (2017) Construction of small-insert and large-insert metagenomic libraries. Methods Mol Biol 1539:1-12 (DOI:10.1007/978-1-4939-6691-2_1).

Simons NK, Lewinsohn T, Blüthgen N, Buscot F, Boch S, Daniel R, Gossner MM, Jung K, Kaiser K, Müller J, Prati D, Renner SC, Socher SA, Sonnemann I, Weiner CN, Werner M, Wubet T, Wurst S, Weisser WW (2017) Contrasting effects of grassland management modes on species-abundance distributions of multiple groups. Agriculture, Ecosystems & Environment 237:143-153 (DOI:10.1016/j.agee.2016.12.022).

Song W, Steensen K, Thomas T (2017) HgtSIM: a simulator for horizontal gene transfer (HGT) in microbial communities. PeerJ 5:e4015 (DOI:10.7717/peerj.4015).

Villamizar GA, Nacke H, Daniel R (2017) Function-based metagenomic library screening and heterologous expression strategy for genes encoding phosphatase activity. Methods Mol Biol 1539:249-260 (DOI:10.1007/978-1-4939-6691-2_16).

Villamizar GAC, Daniel R, Poehlein A (2017) First insights into the genome sequence of the strictly anaerobic homoacetogenic Sporomusa sphaeroides strain E (DSM 2875). Genome Announc 5(12):e00037-17 (DOI:10.1128/genomeA.00037-17).

Wemheuer B, Wemheuer F (2017) Assessing bacterial and fungal diversity in the plant endosphere. Methods Mol Biol 1539:75-84 (DOI:10.1007/978-1-4939-6691-2_6).

Wemheuer F, Kaiser K, Karlovsky P, Daniel R, Vidal S, Wemheuer B (2017) Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes. Sci Rep 7:40914 (DOI:10.1038/srep40914).

Wemheuer F, Hollensteiner J, Poehlein A, Granzow S, Daniel R, Vidal S, Wemheuer B (2017) Draft genome sequence of Pseudomonas putida strain GM4FR, an endophytic bacterium isolated from Festuca rubra L. Genome Announc 5(13):e00086-17 (DOI:10.1128/genomeA.00086-17).

Wemheuer B, Wemheuer F, Meier D, Billerbeck S, Giebel H-A, Simon M, Scherber C, Daniel R (2017) Linking compositional and functional predictions to decipher the biogeochemical significance in DFAA turnover of abundant bacterioplankton lineages in the North Sea. Microorganisms 5(4):68 (DOI:10.3390/microorganisms5040068 ).

Wendling CC, Piecyk A, Refardt D, Chibani C, Hertel R, Liesegang H, Bunk B, Overmann J, Roth O (2017) Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria. BMC Evol Biol 17(1):98 (DOI:10.1186/s12862-017-0930-2).

Willms IM, Hoppert M, Hertel R (2017) Characterization of Bacillus subtilis viruses vB_BsuM-Goe2 and vB_BsuM-Goe3. Viruses 9(6):146 (DOI:10.3390/v9060146).

Wöhlbrand L, Wemheuer B, Feenders C, Ruppersberg HS, Hinrichs C, Blasius B, Daniel R, Rabus R (2017) Complementary metaproteomic approaches to assess the bacterioplankton response towards a phytoplankton spring bloom in the southern North Sea. Front Microbiol 8:442 (DOI:10.3389/fmicb.2017.00442).

Wu D, Senbayram M, Well R, Brüggemann N, Pfeiffer B, Loick N, Stempfhuber B, Dittert K, Bol R (2017) Nitrification inhibitors mitigate N2O emissions more effectively under straw-induced conditions favoring denitrification. Soil Biol Biochem 104:197-207 (DOI:10.1016/j.soilbio.2016.10.022).

Wübbeler JH, Oppermann-Sanio FB, Ockenfels A, Röttig A, Osthaar-Ebker A, Verbarg S, Poehlein A, Madkour MH, Al-Ansari AM, Almakishah NH, Daniel R, Steinbüchel A (2017) Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil. Int J Syst Evol Microbiol 67(10):4057-4063 (DOI:10.1099/ijsem.0.002249).