Software (in-house developments) ClassiPhage ClassiPhage is a method under active development for phage taxonomic classification.Files for download ReadMe.docx lgn_hmm_scan.csv Ino_refined_HMMs Myo_refined_HMMs Podo_refined_HMMs Sipho_refined_HMMs CutSPR CutSPR is a tool that assists the construction of a mutagenesis vector based on the pJoe8999 plasmid system. CutSPR sources Binaries (64 bit): CutSPR (Linux) CutSPR (Windows) CutSPR (MacOS X) TraV - Transcriptome Viewer TraV download SAMtoTDS source Sample Data for TraV ECFfinder - ECF-Sigma-factor identification tool Download the ECF_HMM_Models scores for ECF_HMM_Models evidence data Fasta file of all annotated protein sequences from the Sargasso Sea Metagenome ECFfinder Results of the Sargasso Sea Metagenome scan In order to use the ECFfinder, please ensure that your firewall allows full access to port 8080.
